A French hospital provides clinical bio-informatics services dedicated to next-generation sequencing (NGS)

Center name Тестовый центр
Summary The French hospital has a strong expertise in next-generation sequencing (NGS) raw data analysis and clinical interpretation. With its two in-house developed and user-friendly softwares, the hospital offers services from storage and analysis of raw data to clinical report issuing. The hospital is looking for medical biology laboratories from public hospitals or private organizations interested in service agreements.
Description of the offer This French university hospital center is a well-known specialist in clinical next-generation sequencing (NGS) raw data processing. Based on the bio-informatic plaform, two softwares suited for routine clinical diagnosis have been developed. They are dedicated to various applications in personalized medicine, i.e. cancer, rare diseases and microbiology. The softwares complement one another, the first focusing on safe storage and robust analysis while the second achieves clinical interpretation: (1) The first software allows to load, store, document and analyze the raw data from sequencing output to variant calling. The processing chain used for the analysis can be custom-designed for any pathology of interest. These protocols are fixed and versioned for robustness and repeatability purposes. The output file is in Variant Call Format (VCF). All bio-informatics workflows are based on published reference open source algorithms, and are accessible transparently. (2) The second software takes as input VCF files and facilitates the interpretation of the NGS analysis results, carrying out annotation, filtering, viewing and conversion in a clinical report. All the public databases of variant frequencies are available for annotation. For repeatability purposes again, the filtering steps, of varying complexity, can be fixed. Variant viewing is carried out through a genome browser, integrated in an identity card of the variant. Through the software, the partner can build a database of validated and optionally commented variants. Both softwares are being deployed in all the hospitals of the French university hospital center. These softwares are independent and can be used separately. In practice, there is no installation whatsoever: the partner would connect to the software website, drag and drop the input files, analyse them through either or both softwares and export the output files on its personal computer. The hospital offers service agreements to hospitals or private companies, from startups to big pharmaceutical companies. The hospital proposes to analyze clinical NGS data. Partners will can therefore interpret and capitalize on their NGS data.
Advantages and Innovations - The hospital can offer its expertise in all DNA-sequencing technologies: panel, exome or genome sequencing. - All the steps of the processes of both softwares are quality checked through a management quality system. - The storage servers are certified for health data hosting. - The processing chain used for data analysis can be custom-designed for any pathology of interest. - The system is suited for routine clinical diagnosis in cancer, rare diseases and microbiology.
Market Keywords 02006004 Data processing, analysis and input services
02007012 Medical/health software
04014 Bioinformatics
05001001 Diagnostic services
05007006 Computer-aided diagnosis and therapy
Type of Partnership Required Services Agreement
Type and Role of Partner Sought Partners could be any public or private medical biology laboratory using NGS sequencing technologies and interested in bio-informatics analysis services for diagnostic purposes.
Restrict Dissemination to specific countries Albania
Argentina
Armenia
Austria
Belarus
Belgium
Bosnia and Herzegovina
Brazil
Bulgaria
Canada
Chile
China
Croatia
Cyprus
Czech Republic
Denmark
Egypt
Estonia
Finland
France
Georgia
Germany
Greece
Hungary
Iceland
India
Ireland
Israel
Italy
Japan
Jordan
Latvia
Lithuania
Luxembourg
Macedonia, The former Yugoslav Republic of
Malta
Mexico
Moldova
Montenegro
Netherlands
New Zealand
Norway
Paraguay
Peru
Poland
Portugal
Romania
Russian Federation
Serbia
Singapore
Slovakia
Slovenia
South Korea
Spain
Sweden
Switzerland
Taiwan
Tunisia
Turkey
Ukraine
United Kingdom
USA
Date of creation 25.04.2018
Profile type Business offer
Profile openness to interact N
Profile from EEN Y

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